CNTN4, chr3:2140497-3099645 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4343610 chr3:2907746 CNTN4 All: C 7,520 8 G vs. A 0.333 (G) 0.108 (G) 0.90 (0.84-0.97) 59 (11-81) 0.004
Meta_image?name=rs4343610

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4343610 chr3:2907746 CNTN4 All: C 7,520 8 G vs. A 0.333 (G) 0.108 (G) 0.90 (0.84-0.97) 59 (11-81) 0.004
rs9822614 chr3:2786502 CNTN4 All: C 7,520 8 G vs. A 0.192 (G) 0.333 (G) 0.89 (0.82-0.97) 44 (0-75) 0.005
rs17564391 chr3:2635044 CNTN4 All: C 7,520 8 T vs. C 0.167 (T) 0.192 (T) 0.90 (0.83-0.97) 0 (0-52) 0.007
rs17025031 chr3:3074356 CNTN4 All: C 7,520 8 G vs. T 0.083 (G) - 0.87 (0.78-0.97) 0 (-) 0.014
rs7614036 chr3:2790335 CNTN4 All: C 7,520 8 C vs. T 0.225 (C) 0.333 (C) 0.92 (0.85-0.99) 26 (0-66) 0.032
rs9310883 chr3:2974332 CNTN4 All: C 7,520 8 T vs. C 0.383 (T) 0.45 (C) <1 (-) 0 (-) <0.05
rs3897737 chr3:2796413 CNTN4 All: C 7,520 8 C vs. T 0.292 (G) 0.433 (G) <1 (-) 0 (-) <0.05
rs1720201 chr3:2338230 CNTN4 All: C 7,520 8 G vs. A 0.317 (G) 0.4 (A) <1 (-) 51 (-) >0.05
rs1403635 chr3:2289797 CNTN4 All: C 7,520 8 C vs. T 0.242 (G) 0.008 (G) >1 (-) 0 (-) >0.05
rs2728067 chr3:2645525 CNTN4 All: C 7,520 8 G vs. T 0.142 (G) - >1 (-) 0 (-) >0.05
rs1153507 chr3:2291233 CNTN4 All: C 7,520 8 T vs. C 0.242 (A) - >1 (-) 0 (-) >0.05
rs1466459 chr3:2621687 CNTN4 All: C 7,520 8 A vs. G 0.367 (A) 0.342 (A) 0.94 (0.88-1.01) 0 (0-2) 0.073
rs6442766 chr3:2975572 CNTN4 All: C 7,520 8 T vs. G 0.35 (T) 0.433 (T) >1 (-) 0 (-) >0.05
rs163567 chr3:3094449 CNTN4 All: C 7,520 8 T vs. G 0.117 (T) - <1 (-) 18 (-) >0.05
rs10510237 chr3:2714758 CNTN4 All: C 7,520 8 A vs. G 0.15 (A) - >1 (-) 0 (-) >0.05
rs1400211 chr3:2842906 CNTN4 All: C 7,520 8 G vs. A 0.45 (G) 0.308 (G) 0.95 (0.88-1.01) 10 (0-71) 0.094
rs11129309 chr3:2862413 CNTN4 All: C 7,520 8 A vs. G 0.217 (A) 0.275 (A) <1 (-) 0 (-) >0.05
rs1499135 chr3:2947574 CNTN4 All: C 7,520 8 C vs. T 0.083 (G) - >1 (-) 0 (-) >0.05
rs6795508 chr3:2278068 CNTN4 All: C 7,520 8 T vs. C 0.292 (T) 0.442 (T) <1 (-) 45 (-) >0.05
rs2046037 chr3:2600803 CNTN4 All: C 7,520 8 G vs. A 0.267 (G) 0.483 (A) <1 (-) 0 (-) >0.05
rs975334 chr3:2846315 CNTN4 All: C 7,520 8 T vs. C 0.333 (A) 0.208 (G) >1 (-) 0 (-) >0.05
rs4425236 chr3:2153239 CNTN4 All: C 7,520 8 C vs. T 0.242 (C) 0.4 (C) <1 (-) 0 (-) >0.05
rs6442763 chr3:2921514 CNTN4 All: C 7,520 8 A vs. C 0.45 (A) 0.083 (A) >1 (-) 0 (-) >0.05
rs2619566 chr3:2624937 CNTN4 All: C 7,520 8 C vs. T 0.108 (G) 0.475 (A) <1 (-) 56 (-) >0.05
rs1033237 chr3:2770913 CNTN4 All: C 7,520 8 A vs. G 0.067 (T) 0.0 (T) >1 (-) 0 (-) >0.05
rs1474021 chr3:2824557 CNTN4 All: C 7,520 8 T vs. C 0.158 (A) 0.142 (A) <1 (-) 45 (-) >0.05
rs2600274 chr3:2716743 CNTN4 All: C 7,520 8 A vs. G 0.275 (A) 0.025 (A) 1.06 (0.98-1.16) 0 (0-18) 0.145
rs9872038 chr3:2903407 CNTN4 All: C 7,520 8 T vs. G 0.217 (T) - >1 (-) 34 (-) >0.05
rs10510242 chr3:2991619 CNTN4 All: C 7,520 8 C vs. A 0.15 (C) - >1 (-) 33 (-) >0.05
rs2729277 chr3:2128833 CNTN4 [-11664bp] All: C 7,520 8 G vs. A 0.475 (G) 0.408 (G) >1 (-) 0 (-) >0.05
rs9310863 chr3:2877546 CNTN4 All: C 7,520 8 G vs. T 0.258 (G) 0.358 (G) >1 (-) 0 (-) >0.05
rs11707897 chr3:2614625 CNTN4 All: C 7,520 8 C vs. T 0.225 (C) 0.058 (C) >1 (-) 0 (-) >0.05
rs11923606 chr3:2325102 CNTN4 All: C 7,520 8 C vs. T 0.283 (C) 0.483 (T) <1 (-) 0 (-) >0.05
rs6781913 chr3:2966603 CNTN4 All: C 7,520 8 G vs. A 0.483 (G) 0.233 (A) <1 (-) 0 (-) >0.05
rs10510240 chr3:2904528 CNTN4 All: C 7,520 8 T vs. C 0.083 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs10510245 chr3:3038701 CNTN4 All: C 7,520 8 A vs. C 0.158 (A) - <1 (-) 35 (-) >0.05
rs7638086 chr3:2275039 CNTN4 All: C 7,520 8 A vs. G 0.25 (A) - >1 (-) 0 (-) >0.05
rs1973683 chr3:2777261 CNTN4 All: C 7,520 8 G vs. A 0.075 (G) 0.125 (G) >1 (-) 0 (-) >0.05
rs339286 chr3:3081543 CNTN4 All: C 7,520 8 T vs. C 0.067 (T) - <1 (-) 1 (-) >0.05
rs12636309 chr3:2573530 CNTN4 All: C 7,520 8 G vs. A 0.092 (G) 0.458 (G) <1 (-) 0 (-) >0.05
rs1014805 chr3:2335470 CNTN4 All: C 7,520 8 C vs. T 0.408 (G) 0.4 (A) <1 (-) 39 (-) >0.05
rs2616595 chr3:2639256 CNTN4 All: C 7,520 8 T vs. C 0.392 (A) 0.492 (A) <1 (-) 0 (-) >0.05
rs3846132 chr3:3077967 CNTN4 All: C 7,520 8 A vs. G 0.433 (T) 0.417 (C) >1 (-) 0 (-) >0.05
rs2727926 chr3:2145995 CNTN4 All: C 7,520 8 T vs. C 0.408 (T) 0.367 (C) <1 (-) 0 (-) >0.05
rs163543 chr3:3080526 CNTN4 All: C 7,520 8 C vs. T 0.058 (C) 0.0 (C) >1 (-) 0 (-) >0.05
rs4234548 chr3:2705018 CNTN4 All: C 7,520 8 A vs. G 0.4 (A) 0.192 (A) >1 (-) 18 (-) >0.05
rs1393486 chr3:2419967 CNTN4 All: C 7,520 8 C vs. T 0.458 (G) 0.083 (G) >1 (-) 2 (-) >0.05
rs1685495 chr3:2390611 CNTN4 All: C 7,520 8 C vs. A 0.458 (C) 0.117 (A) <1 (-) 18 (-) >0.05
rs9869655 chr3:3121856 IL5RA All: C 7,520 8 A vs. G 0.125 (A) 0.233 (A) >1 (-) 0 (-) >0.05
rs1995209 chr3:2432611 CNTN4 All: C 7,520 8 G vs. T 0.225 (G) 0.092 (G) >1 (-) 0 (-) >0.05

Association studies for this region [+]